DreEX0060971 @ danRer10
Exon Skipping
Gene
ENSDARG00000029372 | rasa4
Description
RAS p21 protein activator 4 [Source:ZFIN;Acc:ZDB-GENE-060526-349]
Coordinates
chr5:58624728-58634292:+
Coord C1 exon
chr5:58624728-58624784
Coord A exon
chr5:58628128-58628241
Coord C2 exon
chr5:58634231-58634292
Length
114 bp
Sequences
Splice sites
3' ss Seq
GTTTTGTTTTTGTCTTTTAGGAC
3' ss Score
12.36
5' ss Seq
CAGGTCTGG
5' ss Score
5.06
Exon sequences
Seq C1 exon
AACTGGAAGCAGTGATCCATACTGCATCGTGAAGATTGATAATGAAGCAATAATTCG
Seq A exon
GACAGCAACAATATGGAAGACACTTTCTCCGTTTTGGGGTGAAGAATACACTGTCCATCTTCCTCCCTACTTCCGCACAGTCTCTTTTTATGTGCTGGATGAAGACTCTCTCAG
Seq C2 exon
CCGGGATGATGTCATCGGGAAGGTGTCAATCACTAAGGAGGTGCTCTCCGCCAAACCGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000029372-'1-2,'1-1,3-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=FE(23.2=100)
A:
PF0016825=C2=FE(46.3=100)
C2:
PF0016825=C2=PD(11.0=40.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGCAGTGATCCATACTGCA
R:
CTTGCGGTTTGGCGGAGAG
Band lengths:
115-229
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]