RnoEX6063927 @ rn6
Exon Skipping
Gene
ENSRNOG00000001431 | Rasa4
Description
RAS p21 protein activator 4 [Source:RGD Symbol;Acc:1565457]
Coordinates
chr12:23616789-23618996:-
Coord C1 exon
chr12:23618940-23618996
Coord A exon
chr12:23617406-23617519
Coord C2 exon
chr12:23616789-23616850
Length
114 bp
Sequences
Splice sites
3' ss Seq
TGAGGCATCTTCTCCTATAGGAC
3' ss Score
8.49
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
CACGGGCAGCAGCGACCCCTACTGCATCGTGAAGGTGGACAATGAACCAATCATCAG
Seq A exon
GACAGCCACTGTGTGGAAGACCCTGTGCCCATTCTGGGGTGAAGAGTACCAAGTACATTTACCCCCCACATTCCACATGGTGGCCTTCTATGTTATGGATGAAGACGCCCTTAG
Seq C2 exon
CCGGGACGATGTGATCGGGAAGGTCTGCCTCACAAGGGATGAGCTAACCTCTCACCCAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001431-'4-4,'4-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=FE(23.2=100)
A:
PF0016825=C2=FE(46.3=100)
C2:
PF0016825=C2=PD(11.0=40.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCAGCGACCCCTACT
R:
CCTTTGGGTGAGAGGTTAGCT
Band lengths:
114-228
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]