GgaEX6017115 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr19:4139038-4139649:-
Coord C1 exon
chr19:4139593-4139649
Coord A exon
chr19:4139297-4139410
Coord C2 exon
chr19:4139038-4139099
Length
114 bp
Sequences
Splice sites
3' ss Seq
CGGTGCCATCTGTCCCACAGGAC
3' ss Score
10.38
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
CACGGGGAGCAGCGACCCGTACTGCATTGTGAAGATTGACAATGAGGCCATCGTCAG
Seq A exon
GACTGCCACGGTGTGGAAGACGCTGTCCCCATTCTGGGGGGAAGAGTATGAGGTGCAGCTCCATCCCACCTTCCACAGCATCTCCATCTATGTCATGGATGAGGATGCGCTCAG
Seq C2 exon
CCGCGATGATGTTATTGGGAAGGTGTGCATCACCCGCACCATGCTGGCAGAGCACCCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001876-'2-2,'2-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=FE(23.2=100)
A:
PF0016825=C2=FE(46.3=100)
C2:
PF0016825=C2=PD(11.0=40.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCAGCGACCCGTACT
R:
CTTTGGGGTGCTCTGCCAG
Band lengths:
114-228
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]