DreEX0061877 @ danRer10
Exon Skipping
Gene
ENSDARG00000007727 | rgl2
Description
ral guanine nucleotide dissociation stimulator-like 2 [Source:ZFIN;Acc:ZDB-GENE-010131-1]
Coordinates
chr16:45418315-45422136:-
Coord C1 exon
chr16:45422027-45422136
Coord A exon
chr16:45418509-45418724
Coord C2 exon
chr16:45418315-45418418
Length
216 bp
Sequences
Splice sites
3' ss Seq
ATGTTTTGTTTGGCCTAAAGGAT
3' ss Score
5.55
5' ss Seq
GAGGTCAGA
5' ss Score
5.24
Exon sequences
Seq C1 exon
ATCCTACCAAAGGTCTGTTGTCTCCTCCGAACCCCTCAGACTTTGATGCCACCAGCGTCCTGGGATTTCCATCTAGCGTGATCGCAGAGCAGCTCACCAGGATTGAGACA
Seq A exon
GATCTGTTTCTGAAGCTGGTGCCCCATCACTGCCTGGGCTCTCTGTGGTCTCAGAGAGATAAGAAGGGTCAGGAAGGAGCATGTTGGTCAGTCAGAGCAACTATCAAGCAGTTTAATCGCTTAGCTAACGCCGTCACGGCCTCGTGTCTGTGGATGACAACTCTGAAGAGCCAGCAGAGGGCCAGACTGCTGGAGAAGTGGATCAGCGTTGCAGAG
Seq C2 exon
GCCTGCAGAACCAGGAAGAACTTCTCATCGCTGTACGCCATCCTCTCAGCGCTGCAGAGCAACCCCATTCACAGACTGAGGAAGACCTGGCAGGAGACAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007727-'11-11,'11-10,12-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.135 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=PU(7.5=43.2),PF094555=Cas_DxTHG=PU(0.5=2.7)
A:
PF0061714=RasGEF=FE(33.5=100),PF094555=Cas_DxTHG=FE(38.0=100)
C2:
PF0061714=RasGEF=FE(16.0=100),PF094555=Cas_DxTHG=FE(18.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTACCAAAGGTCTGTTGTCTCC
R:
CTGTCTGTCTCCTGCCAGGTC
Band lengths:
212-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]