DreEX0062749 @ danRer10
Exon Skipping
Gene
ENSDARG00000032261 | rngtt
Description
RNA guanylyltransferase and 5'-phosphatase [Source:ZFIN;Acc:ZDB-GENE-040426-2087]
Coordinates
chr20:925833-950491:-
Coord C1 exon
chr20:950391-950491
Coord A exon
chr20:936069-936135
Coord C2 exon
chr20:925833-925956
Length
67 bp
Sequences
Splice sites
3' ss Seq
TATTTGTGTGTCTTCCTCAGGCT
3' ss Score
9.79
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
AAATATAAGCCAGGCCGATGTGATGACATCCTGAAGTGGAAGCCGCCGAGTCACAACTCTGTGGATTTCAGACTCAAGATCACCAAAGTCGGCGGCGAGGG
Seq A exon
GCTGATCCCGCAGACGGTTGGTCTCCTGTACGTGGGGAACTATGACATGCCCTTTGCGCAAATGAAG
Seq C2 exon
ATAACAAAGGACCTGAAGCAGTACGATAATAAAATAATCGAGTGCACGTTCGTCAACAACACCTGGGTGTTCATGCGGCAGAGAGTTGACAAGAGCTTCCCCAACGCATACGACACGGCCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000032261_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0133114=mRNA_cap_enzyme=PD(6.9=38.2),PF0391910=mRNA_cap_C=PU(17.3=50.0)
A:
PF0391910=mRNA_cap_C=FE(22.4=100)
C2:
PF0391910=mRNA_cap_C=FE(41.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATCCTGAAGTGGAAGCCG
R:
CTTGTCAACTCTCTGCCGCAT
Band lengths:
170-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]