RnoEX0076571 @ rn6
Exon Skipping
Gene
ENSRNOG00000007867 | Rngtt
Description
RNA guanylyltransferase and 5'-phosphatase [Source:RGD Symbol;Acc:1311410]
Coordinates
chr5:48660088-48775626:+
Coord C1 exon
chr5:48660088-48660188
Coord A exon
chr5:48698910-48698976
Coord C2 exon
chr5:48775503-48775626
Length
67 bp
Sequences
Splice sites
3' ss Seq
ATTTTTCTCCCACCTTGTAGGTT
3' ss Score
10.44
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
AAATACAAACCTGGTCGATGTGATGACATTTTGAAATGGAAACCTCCCAGCCTAAATTCTGTGGACTTTCGACTTAAGATAACAAGAATGGGAGGAGAAGG
Seq A exon
GTTGCTGCCACAGAATGTTGGCCTTCTCTATGTTGGAGGTTATGAAAGACCCTTTGCACAAATCAAG
Seq C2 exon
GTGACAAAAGAACTAAAACAGTACGACAACAAAATTATAGAATGCAAATTTGAGAACAACAGCTGGGTCTTCATGAGACAGAGAATAGACAAAAGTTTCCCAAATGCCTACAACACAGCCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007867-'22-31,'22-28,30-31
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0133114=mRNA_cap_enzyme=PD(6.9=38.2),PF0391910=mRNA_cap_C=PU(17.3=50.0)
A:
PF0391910=mRNA_cap_C=FE(22.4=100)
C2:
PF0133114=mRNA_cap_enzyme=PD(5.9=26.2),PF0391910=mRNA_cap_C=FE(43.6=100)
Main Skipping Isoform:
ENSRNOT00000010614fB12593
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCCAGCCTAAATTCTGTGG
R:
GCTGTGTTGTAGGCATTTGGG
Band lengths:
178-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]