GgaEX1049783 @ galGal3
Exon Skipping
Gene
ENSGALG00000015787 | RNGTT
Description
NA
Coordinates
chr3:78687444-78744093:+
Coord C1 exon
chr3:78687444-78687544
Coord A exon
chr3:78715339-78715405
Coord C2 exon
chr3:78743970-78744093
Length
67 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTCCTTTTTTTTTAGGCT
3' ss Score
11.86
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
AAATACAAGCCTGGTCGATGTGACGATATTCTGAAATGGAAGCCACCCAGCCTGAACTCTGTTGATTTTCGTCTGAAGATAACGAGAATTGGTGGAGAAGG
Seq A exon
GCTACTCACCCAGAATGTTGGTCTTCTTTACGTTGGAAACTTTGACAGACCTTTTGCACAGATTAAG
Seq C2 exon
GTGACAAAAGAACTGAAACAGTATGACAATAAAATCATTGAGTGCAAGTTTGAGAACAACAGCTGGGTCTTCATGAGACAGAGAATAGACAAAAGCTTTCCAAATGCCTACAGCACTGCCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015787-'20-27,'20-22,22-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0133114=mRNA_cap_enzyme=PD(6.9=38.2),PF0391910=mRNA_cap_C=PU(17.3=50.0)
A:
PF0391910=mRNA_cap_C=FE(22.4=100)
C2:
PF0391910=mRNA_cap_C=FE(41.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCCAGCCTGAACTCTGTTG
R:
GCTGTAGGCATTTGGAAAGCT
Band lengths:
172-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]