RnoEX0076573 @ rn6
Exon Skipping
Gene
ENSRNOG00000007867 | Rngtt
Description
RNA guanylyltransferase and 5'-phosphatase [Source:RGD Symbol;Acc:1311410]
Coordinates
chr5:48687450-48698976:+
Coord C1 exon
chr5:48687450-48687556
Coord A exon
chr5:48695038-48695101
Coord C2 exon
chr5:48698910-48698976
Length
64 bp
Sequences
Splice sites
3' ss Seq
CTTACTTTAAATTATTATAGAAA
3' ss Score
5.89
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GTCGTCTCACTATGTAACTCTGACCTGGTCTGAAGTTGTACCGTAGACTAAGCTGGTGGGCACTCAAACATTCTCTTGTCTCTTCCTTTTGAACATCGGGATTCAAG
Seq A exon
AAACTATACAGACGAAGCCAGTCATGGTGTCATGTGTCTTAATATCAGCACTCAGGAAGCAGAG
Seq C2 exon
GTTGCTGCCACAGAATGTTGGCCTTCTCTATGTTGGAGGTTATGAAAGACCCTTTGCACAAATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007867-'24-28,'24-27,25-28
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0391910=mRNA_cap_C=FE(22.4=100)
Main Inclusion Isoform:
ENSRNOT00000010614fB12594
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTCTGACCTGGTCTGAAGT
R:
ACCTCCAACATAGAGAAGGCCA
Band lengths:
132-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]