RnoEX0076572 @ rn6
Exon Skipping
Gene
ENSRNOG00000007867 | Rngtt
Description
RNA guanylyltransferase and 5'-phosphatase [Source:RGD Symbol;Acc:1311410]
Coordinates
chr5:48670765-48695952:+
Coord C1 exon
chr5:48670765-48670850
Coord A exon
chr5:48687450-48687556
Coord C2 exon
chr5:48695038-48695952
Length
107 bp
Sequences
Splice sites
3' ss Seq
CTGTTTGTTTTTTTTGCAAGGTC
3' ss Score
8.38
5' ss Seq
AAGGTGTGC
5' ss Score
6.3
Exon sequences
Seq C1 exon
GTGTGGGTATGTTTGCTTGCTTGCTTGTCTGCTTGTGCAAGCCTGAAGAAGCCAGGACATCAGATCCTTTGGAATGGGAGCTACAG
Seq A exon
GTCGTCTCACTATGTAACTCTGACCTGGTCTGAAGTTGTACCGTAGACTAAGCTGGTGGGCACTCAAACATTCTCTTGTCTCTTCCTTTTGAACATCGGGATTCAAG
Seq C2 exon
AAACTATACAGACGAAGCCAGTCATGGTGTCATGTGTCTTAATATCAGCACTCAGGAAGCAGAGGTAGGTGCATCTCTAAGGTTTCAGCCAAAGCTGTACACTGAGGCCTTGTCTTCAGCAACGGCAGCAAAACCCTGTTCCACTGAAGATAGTGAGGAATGTGATAAGGAGTAATAGATGCTCTTGCAAGTTAGAGAGAAAGGCTAACTGCTAACATGTAAGAAAATGCTGAGGAAATTTAGTTTTTAGATAGCAAATTAAAGGAATAGAGGTGCACACTAACTAGTATATTGGCAAACTTCCTGAGATGCATGTGCATGGTAATTAGAAGCATATTGACTTTTAAATGTCAGCCAGCTTTTATTCTCTTCCTCCTAGTGTCTGTTTGTATGAACAGTGATTATTTTTACTTTTCAAGGGGGTTATCAAGTTTTCTGTGAACATTTGTTAATTACTACTACTATATATAGCTGCTACCAGCAATGGTTCAGGGTTTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007867-'23-27,'23-26,24-27
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
ENSRNOT00000010614fB12594
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGGGTATGTTTGCTTGCT
R:
TCACTATCTTCAGTGGAACAGGGT
Band lengths:
242-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]