DreEX0064298 @ danRer10
Exon Skipping
Gene
ENSDARG00000077093 | scaf4a
Description
SR-related CTD-associated factor 4a [Source:ZFIN;Acc:ZDB-GENE-030131-9003]
Coordinates
chr10:25750858-25751383:-
Coord C1 exon
chr10:25751298-25751383
Coord A exon
chr10:25751098-25751142
Coord C2 exon
chr10:25750858-25751019
Length
45 bp
Sequences
Splice sites
3' ss Seq
GAAAACATTTTGTCTTTCAGTTA
3' ss Score
7.82
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
AGTTGTTCTCCTTGATGGACACCAAGCCCCCCATCTCGAGGGCCAAGATGATCTCTATCACCAAATCTGCCATAAAAGCTATCAAA
Seq A exon
TTATACAAGCATGTTGTCCAGATAGTGGAAAAGTTCATAAAGAAG
Seq C2 exon
TGCAAACCGGAGTACAAAGTTCCCGGTCTCTATGTGGTGGATTCCATTGTGAGACAGTCACGGCATCAGTTTGGAGCAGATAAAGATGTGTTTGGACCCAGGTTTACTAAAAACATCACTGGGACATTTGAGAATCTATGCTTGTGTCCCACTGAAGATCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077093-'4-4,'4-3,5-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.047 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF048188=CTD_bind=PU(72.7=88.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTTGATGGACACCAAGCC
R:
CTGATGCCGTGACTGTCTCAC
Band lengths:
148-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]