BtaEX6000187 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018855 | SCAF4
Description
SR-related CTD-associated factor 4 [Source:HGNC Symbol;Acc:HGNC:19304]
Coordinates
chr1:3073151-3075168:+
Coord C1 exon
chr1:3073151-3073234
Coord A exon
chr1:3073765-3073809
Coord C2 exon
chr1:3075007-3075168
Length
45 bp
Sequences
Splice sites
3' ss Seq
ATTCTTTTTGTTCTTTTCAGCTT
3' ss Score
10.26
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
CTCTTTTCACTTATGGATATGAAACCTCCCATCTCTCGAGCCAAGATGATTCTCATCACGAAAGCTGCTATTAAAGCTATAAAG
Seq A exon
CTTTATAAGCATGTGGTTCAAATAGTAGAAAAGTTCATCAAAAAG
Seq C2 exon
TGTAAACCAGAATACAAGGTTCCAGGATTATATGTAATCGACTCAATTGTGCGACAGTCTCGTCATCAGTTTGGAACTGATAAAGATGTTTTTGGGCCAAGATTCTCTAAAAACATAACTGCCACATTCCAATATCTGTATCTTTGTCCATCTGAAGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018855-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF048188=CTD_bind=PU(72.7=88.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCATCTCTCGAGCCAAGA
R:
TCCAAACTGATGACGAGACTGT
Band lengths:
134-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]