HsaEX0057659 @ hg19
Exon Skipping
Gene
ENSG00000156304 | SFRS15
Description
SR-related CTD-associated factor 4 [Source:HGNC Symbol;Acc:19304]
Coordinates
chr21:33076078-33078670:-
Coord C1 exon
chr21:33078587-33078670
Coord A exon
chr21:33077736-33077780
Coord C2 exon
chr21:33076078-33076239
Length
45 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTTAATTCTTTTCAGCTT
3' ss Score
9.73
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
CTCTTTTCGCTTATGGATATGAAACCTCCCATCTCTAGAGCCAAGATGATTCTCATCACTAAAGCTGCTATTAAAGCTATTAAG
Seq A exon
CTTTATAAGCATGTAGTTCAAATAGTAGAAAAGTTCATCAAAAAG
Seq C2 exon
TGTAAACCAGAATACAAGGTTCCGGGATTATATGTAATTGACTCAATTGTGCGACAGTCTCGTCATCAGTTTGGAACTGATAAAGATGTTTTTGGGCCAAGATTCTCTAAAAACATAACTGCCACATTCCAATATTTATATCTTTGTCCATCTGAAGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000156304_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.003
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF048188=CTD_bind=PU(72.7=88.9)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCCCATCTCTAGAGCCAA
R:
TCCAAACTGATGACGAGACTGT
Band lengths:
136-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)