MmuEX6063295 @ mm10
Exon Skipping
Gene
ENSMUSG00000022983 | Scaf4
Description
SR-related CTD-associated factor 4 [Source:MGI Symbol;Acc:MGI:2146350]
Coordinates
chr16:90260141-90263176:-
Coord C1 exon
chr16:90263093-90263176
Coord A exon
chr16:90262174-90262218
Coord C2 exon
chr16:90260141-90260302
Length
45 bp
Sequences
Splice sites
3' ss Seq
AATTTTATGTTCTTTTTCAGCTT
3' ss Score
9.9
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
CTCTTCTCACTTATGGATATGAAGCCTCCCATCTCTAGAGCCAAGATGATTCTCATTACTAAAGCTGCTATCAAAGCTATTAAG
Seq A exon
CTTTATAAGCACGTTGTTCAAATAGTAGAAAAGTTCATCAAAAAG
Seq C2 exon
TGTAAGCCAGAATATAAGGTTCCAGGCCTGTATGTCATCGACTCCATCGTGAGACAGTCTCGGCACCAGTTTGGAACTGATAAAGATGTTTTTGGGCCAAGATTCTCTAAAAATATAACTGCTACATTCCAGTATTTATATCTTTGTCCATCTGAAGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022983-'3-3,'3-2,4-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF048188=CTD_bind=PU(72.7=88.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCCCATCTCTAGAGCCAA
R:
CAAACTGGTGCCGAGACTGTC
Band lengths:
134-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types