RnoEX6056495 @ rn6
Exon Skipping
Gene
ENSRNOG00000002104 | Scaf4
Description
SR-related CTD-associated factor 4 [Source:RGD Symbol;Acc:727896]
Coordinates
chr11:30403769-30407277:-
Coord C1 exon
chr11:30407194-30407277
Coord A exon
chr11:30406465-30406509
Coord C2 exon
chr11:30403769-30403930
Length
45 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTTTTTTTTTTTCAGCTT
3' ss Score
11.08
5' ss Seq
AAGGTAACG
5' ss Score
10.19
Exon sequences
Seq C1 exon
CTCTTCTCACTTATGGATATGAAACCACCCATCTCTAGAGCCAAGATGATTCTTATTACTAAAGCTGCTATTAAAGCTATTAAG
Seq A exon
CTTTATAAGCATGTTGTTCAAATAGTAGAAAAGTTCATCAAAAAG
Seq C2 exon
TGTAAGCCAGAGTACAAGGTTCCAGGCCTGTATGTCATTGACTCCATCGTGAGACAGTCTCGGCACCAGTTTGGAACTGATAAAGATGTTTTTGGGCCAAGATTCTCTAAGAATATAACTGCTACATTCCAGTATTTATATCTTTGTCCATCTGAAGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002104-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF048188=CTD_bind=PU(72.7=88.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACCCATCTCTAGAGCCAA
R:
CAAACTGGTGCCGAGACTGTC
Band lengths:
134-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]