GgaEX1050981 @ galGal3
Exon Skipping
Gene
ENSGALG00000013635 | SCAF8
Description
NA
Coordinates
chr3:52226342-52231363:+
Coord C1 exon
chr3:52226342-52226425
Coord A exon
chr3:52229016-52229060
Coord C2 exon
chr3:52231202-52231363
Length
45 bp
Sequences
Splice sites
3' ss Seq
ATACTATCTTTATTTTCCAGTTC
3' ss Score
9.26
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
TTGTACTCGCTGAATGATTATAAGCCACCCATTTCTAAAGCTAAAATGACACAGATCACCAAGGCAGCAATCAAGGCTATAAAG
Seq A exon
TTCTACAAGCATGTTGTGCAGAGTGTTGAGAAATTCATTCAAAAG
Seq C2 exon
TGCAAACCAGAATACAAGGTGCCTGGTCTGTATGTCATTGACTCGATTGTGAGACAGTCCCGGCATCAGTTTGGACAAGAGAAGGATGTATTTGCTCCAAGATTCAGCAATAACATCATCAGCACTTTTCAGAACTTGTATCGTTGTCCTGGGGATGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013635-'2-6,'2-5,4-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF048188=CTD_bind=PU(72.7=88.9)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCACCCATTTCTAAAGCT
R:
TCTTGTCCAAACTGATGCCGG
Band lengths:
143-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]