BtaEX6050107 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000031917 | SCAF8
Description
SR-related CTD-associated factor 8 [Source:HGNC Symbol;Acc:HGNC:20959]
Coordinates
chr9:92829887-92839506:+
Coord C1 exon
chr9:92829887-92829970
Coord A exon
chr9:92834951-92834995
Coord C2 exon
chr9:92839345-92839506
Length
45 bp
Sequences
Splice sites
3' ss Seq
CTCTTTTTTTTTTCTTTTAGTTC
3' ss Score
11.1
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
TTGTATTCCCTGAATGACTACAAGCCACCCATTTCTAAAGCGAAAATGACCCAAATTACTAAGGCAGCCATCAAAGCTATAAAG
Seq A exon
TTCTATAAACATGTGGTACAGAGTGTTGAGAAATTCATTCAGAAA
Seq C2 exon
TGTAAACCAGAATATAAGGTGCCTGGACTTTATGTTATTGACTCTATTGTACGACAATCTCGACATCAATTTGGTCAAGAAAAGGATGTGTTTGCACCCAGATTTAGTAATAACATCATTAGCACTTTCCAGAATTTATACCGTTGCCCTGGAGATGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031917-'4-4,'4-3,6-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF048188=CTD_bind=PU(72.7=88.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCAAATTACTAAGGCAGCCA
R:
TGCAAACACATCCTTTTCTTGACC
Band lengths:
132-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]