Special

HsaEX0052633 @ hg38

Exon Skipping

Gene
Description
SR-related CTD associated factor 8 [Source:HGNC Symbol;Acc:HGNC:20959]
Coordinates
chr6:154733325-154788022:+
Coord C1 exon
chr6:154733325-154733930
Coord A exon
chr6:154778001-154778045
Coord C2 exon
chr6:154787861-154788022
Length
45 bp
Sequences
Splice sites
3' ss Seq
TCATTTTTTTCCTCTTTTAGTTC
3' ss Score
11.05
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GCCGCTGCTGCCAGCGCTTCCTCCTCTGTCTTCGCCGAGCGGGGCTGGTTCCTGCGGCCCGAGCGGCGGGGAGGTGAAACAGGAGCCCGTCGGAGGAAGGGGCAGAAGGGAGTGGAGAGTGTAGGGGAAGGGGCTAGAGGGAGGGGGACCGAAACGGAGCGGGGCAGAGAAGAGAAGGCGCCGCGGCCCAGCCCCTCCCCCGCCCGCCGCCGACCCGCCCCGGCAGCGCCTCTGTTCCCTAGAACGGCGCTCCCCCCGCCCTAGCGGCCATGCCGGTGCCGCTCTGCCGCTGAGGGAGCCCTTCCCCGCCAGCGCGTGCCCTTCCACTCCGCCCCGAGGTCGCAGCGGCCCGCTCTCCCGCCAGCGCCCCCTCCTCGCGGCCACGCAGCAGCCCGCGTCTCGCTCTCCCCACCCAGTGCAGTGGCCGCCGCCTCTTCCGCCGCCGGGCTCGGGGCCTCCGCAGCGACAACATGGAGGCCGTGAAGACCTTCAATAGCGAG
Seq A exon
TTCTATAAACATGTGGTACAGAGTGTTGAGAAGTTTATTCAGAAA
Seq C2 exon
TGTAAACCAGAATACAAAGTACCTGGACTTTATGTTATTGACTCCATTGTGCGACAATCCCGACATCAGTTTGGTCAAGAAAAGGATGTGTTTGCACCCAGATTTAGTAATAACATCATTAGCACTTTCCAGAATTTATATCGTTGCCCTGGGGATGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213079_MULTIEX1-3/5=C1-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

Show PDB structure
Features
Disorder rate (Iupred):
  C1=0.138 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
NO
A:
NO
C2:
PF048188=CTD_bind=PU(72.7=88.9)


Main Inclusion Isoform:


Main Skipping Isoform:
ENST00000367186fB25173


Other Inclusion Isoforms:


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAACATGGAGGCCGTGAAG
R:
TGCAAACACATCCTTTTCTTGACC
Band lengths:
132-177
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development