MmuEX0041115 @ mm9
Exon Skipping
Gene
ENSMUSG00000046201 | Scaf8
Description
SR-related CTD-associated factor 8 [Source:MGI Symbol;Acc:MGI:1925212]
Coordinates
chr17:3145075-3159324:+
Coord C1 exon
chr17:3145075-3145158
Coord A exon
chr17:3148536-3148580
Coord C2 exon
chr17:3159163-3159324
Length
45 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTTCTTTTTCTACAGTTT
3' ss Score
10.47
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
TTGTATTCACTGAATGACTATAAGCCACCCATTTCTAAAGCAAAAATGACCCAAATTACAAAGGCAGCCATCAAAGCTATTAAG
Seq A exon
TTTTATAAACATGTGGTACAAAGTGTTGAGAAATTCATTCAGAAA
Seq C2 exon
TGTAAACCAGAATACAAGGTACCTGGACTATATGTTATTGACTCCATTGTGCGACAATCCCGGCATCAGTTTGGTCAAGAAAAGGATGTGTTTGCACCCAGATTTAGTAATAACATCATTAGCACTTTTCAGAATTTATATCGTTGCCCTGGGGATGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046201-'5-10,'5-7,7-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.005
Domain overlap (PFAM):
C1:
PF079616=MBA1=PU(33.3=75.0)
A:
PF079616=MBA1=FE(22.2=100)
C2:
PF048188=CTD_bind=PU(72.7=88.9)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCACCCATTTCTAAAGCAA
R:
GACCAAACTGATGCCGGGATT
Band lengths:
138-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: