RnoEX6000747 @ rn6
Exon Skipping
Gene
ENSRNOG00000016919 | Scaf8
Description
SR-related CTD-associated factor 8 [Source:RGD Symbol;Acc:708362]
Coordinates
chr1:44045275-44056617:+
Coord C1 exon
chr1:44045275-44045358
Coord A exon
chr1:44046000-44046044
Coord C2 exon
chr1:44056456-44056617
Length
45 bp
Sequences
Splice sites
3' ss Seq
TTCTTTCTCTTTTTCTACAGTTC
3' ss Score
10.77
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
TTGTATTCGCTGAATGACTATAAGCCACCCATTTCTAAAGCAAAAATGACCCAGATTACAAAGGCAGCCATCAAAGCTATTAAG
Seq A exon
TTCTATAAACATGTGGTACAGAGCGTTGAGAAATTCATTCAGAAA
Seq C2 exon
TGTAAACCAGAATACAAGGTACCCGGACTGTATGTTATTGACTCCATTGTGCGACAATCCCGGCATCAGTTTGGTCAAGAAAAGGATGTGTTTGCACCCAGATTTAGTAATAACATCATTAGCACTTTCCAGAATTTATATCGGTGCCCGGGGGATGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016919-'7-6,'7-3,10-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF048188=CTD_bind=PU(72.7=88.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAATGACTATAAGCCACCCA
R:
AAACTGATGCCGGGATTGTCG
Band lengths:
148-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]