GgaEX1050975 @ galGal4
Exon Skipping
Gene
ENSGALG00000015850 | SCAF4
Description
splicing factor, arginine/serine-rich 15 [Source:RefSeq peptide;Acc:NP_001012840]
Coordinates
chr1:104018949-104020865:-
Coord C1 exon
chr1:104020782-104020865
Coord A exon
chr1:104020121-104020165
Coord C2 exon
chr1:104018949-104019110
Length
45 bp
Sequences
Splice sites
3' ss Seq
TTTATGTATTTCTTTTCCAGCTC
3' ss Score
9.93
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
CTCTTTTCGCTGATGGAGATGAAACCTCCTATTTCCCGAGCAAAAATGATCCTCATCACAAAAGCCGCCATTAAAGCTATCAAG
Seq A exon
CTCTACAAACACGTTGTCCAGATTGTAGAGAAGTTTATCAAAAAG
Seq C2 exon
TGCAAACCAGAATATAAGGTCCCTGGATTGTATGTTATTGACTCTATTGTTCGTCAGTCTCGTCACCAGTTTGGAACGGATAAAGATGTCTTTGGGCCAAGATTCTCTAAAAATATTACTGCCACATTCCAGTATTTGTATCTCTGTCCATCTGAAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015850-'4-6,'4-5,6-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF048188=CTD_bind=PU(72.7=88.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCTGATGGAGATGAAACCT
R:
ACTGGTGACGAGACTGACGAA
Band lengths:
148-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]