DreEX0064306 @ danRer10
Exon Skipping
Gene
ENSDARG00000018854 | scaf4b
Description
SR-related CTD-associated factor 4b [Source:ZFIN;Acc:ZDB-GENE-050506-42]
Coordinates
chr15:42330135-42338970:+
Coord C1 exon
chr15:42330135-42330218
Coord A exon
chr15:42338667-42338711
Coord C2 exon
chr15:42338809-42338970
Length
45 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTTTTGTCTTGTTAGCTG
3' ss Score
7.78
5' ss Seq
AGGGTATGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
ATGTCGTCCATGATGGACATGACTCCCCCGATCTCTCGAGCCAAAATGATGTCTGTTACCAAAGCAGGAATCAAAGCTATCAGG
Seq A exon
CTGTATAAGCATGTTGTTCAAATTGTGGAGAAGTTCATCAAGAGG
Seq C2 exon
TGTAAACCAGATCTTAAGGTTCCAGGTCTCTACGTGGTCGACTCCATTATCAGACAGTCCCGTCATCAGTTTGGCGCAGACAAAGATTTGTTTGGTCCGAGGTTTCTGAAAAACTTCACTGTAACTTTTCAGAATCTTTTCGAGTGTCCAGAAGATGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000018854-'2-2,'2-1,4-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF048188=CTD_bind=PU(72.7=88.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGACTCCCCCGATCTCTC
R:
ACTGATGACGGGACTGTCTGA
Band lengths:
138-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]