DreEX0065085 @ danRer10
Exon Skipping
Gene
ENSDARG00000074414 | sema4ba
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4Ba [Source:ZFIN;Acc:ZDB-GENE-070705-31]
Coordinates
chr18:25808414-25821714:-
Coord C1 exon
chr18:25821557-25821714
Coord A exon
chr18:25809932-25810113
Coord C2 exon
chr18:25808414-25808564
Length
182 bp
Sequences
Splice sites
3' ss Seq
CTATCTATGTATTGTCACAGGGT
3' ss Score
7.09
5' ss Seq
GTGGTAACA
5' ss Score
3.31
Exon sequences
Seq C1 exon
ACCCCGCTTTTGTGGGCTCAGCCTACATTCAGGAGAGTTTGCCCAAAGGCAATGCAGTGGGCGATGATGATAAGATTTACTTCTTCTTCAGTGAAGCAGGAAAGGAGTTCGATTTCTTTGACAACACTATTGTGTCACGCATCGCTCGCGTGTGTAAG
Seq A exon
GGTGATAAAGGTGGAGAGAGGGTTCTTCAGAAGAAATGGACGACCTTTCTGAAAGCCCAACTCCTGTGTTCACTGCCTGACGATGGCTTCCCCTTCAACATCATCCAAGACATGTTTGTACTGACGCCCAGCAAAGAAGACTGGAAGAAAACCATGTTTTATGGAGTCTTCACCTCACAGTG
Seq C2 exon
GTACAAAGGTGCTTCAGGGAGCTCAGCTGTATGTGCTTTCACTATGGACCAAGTTGAAGAGGCGTTTAATGGACGTTACCGGGAAGTTAATCGCGAGACGCAGCAGTGGTACACCTACAACCATCCAGTGCCAGAACCCAGACCTGGAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074414-'12-13,'12-12,13-13
Average complexity
S
Mappability confidence:
88%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.137
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(11.7=100)
A:
PF0140314=Sema=FE(13.5=100)
C2:
PF0140314=Sema=FE(11.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCAGCCTACATTCAGGAG
R:
GTCTCGCGATTAACTTCCCGG
Band lengths:
243-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]