DreEX0065310 @ danRer10
Exon Skipping
Gene
ENSDARG00000052673 | sept7b
Description
septin 7b [Source:ZFIN;Acc:ZDB-GENE-030131-37]
Coordinates
chr16:47459089-47464556:-
Coord C1 exon
chr16:47464431-47464556
Coord A exon
chr16:47462090-47462110
Coord C2 exon
chr16:47459089-47459224
Length
21 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTTTTTGTCTTTTAGAGT
3' ss Score
11.76
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
AACTCACATGCAGGACCTCAAGGACGTAACAAATAATGTCCACTATGAAAACTACCGAAGCAGGAAGCTGGCGGCCGTCACCTGTAACGGCATCGACAACAACAAAGCCAAAGGCCAGCTCACCAA
Seq A exon
AGTTGACACGGTTGAAGGCAT
Seq C2 exon
GAGTCCTCTCGCTCAGATGGAGGAGGAGAGAAGAGAGCACGTGACTAAGATGAAGAAGATGGAGATGGAGATGGAGCAGGTCTTTGAGATGAAAGTCAAGGAGAAGGTCCAGAAGCTGAAGGATTCAGAGGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052673_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.349 A=1.000 C2=0.726
Domain overlap (PFAM):
C1:
PF0073513=Septin=PD(11.6=74.4),PF0681810=Fez1=FE(28.0=100)
A:
PF0681810=Fez1=FE(4.5=100)
C2:
PF0681810=Fez1=FE(30.0=100)
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATCGACAACAACAAAGCC
R:
CCTGCTCCATCTCCATCTCCA
Band lengths:
118-139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]