GgaEX0018262 @ galGal4
Exon Skipping
Gene
ENSGALG00000012138 | SEPT7
Description
septin-7 [Source:RefSeq peptide;Acc:NP_001012577]
Coordinates
chr2:47492800-47500209:-
Coord C1 exon
chr2:47500084-47500209
Coord A exon
chr2:47495494-47495514
Coord C2 exon
chr2:47492800-47492935
Length
21 bp
Sequences
Splice sites
3' ss Seq
CTGTATTTTTTGTTTTTTAGATT
3' ss Score
11.16
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
AACTCATATGCAGGACCTGAAGGATGTCACTAACAATGTACATTATGAGAACTACAGAAGCAGAAAACTGGCAGCTGTTACATACAACGGTGTTGACAACAATAAAAATAAAGGGCAGCTAACAAA
Seq A exon
ATTTGACACAGTTGAAGGCAT
Seq C2 exon
GAGCCCGCTGGCACAGATGGAGGAGGAGAGGAGAGAGCATGTAGCCAAAATGAAAAAAATGGAGATGGAAATGGAACAGGTGTTTGAGATGAAAGTTAAAGAAAAAGTACAGAAACTGAAGGACTCTGAAGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012138_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.442 A=1.000 C2=0.652
Domain overlap (PFAM):
C1:
PF0073513=Septin=PD(11.6=74.4)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000019828fB2157
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGAAAACTGGCAGCTGTT
R:
ACATGCTCTCTCCTCTCCTCC
Band lengths:
110-131
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]