GgaEX0018262 @ galGal3
Exon Skipping
Gene
ENSGALG00000012138 | F1NIP9_CHICK
Description
NA
Coordinates
chr2:46960103-46967512:-
Coord C1 exon
chr2:46967387-46967512
Coord A exon
chr2:46962797-46962817
Coord C2 exon
chr2:46960103-46960238
Length
21 bp
Sequences
Splice sites
3' ss Seq
CTGTATTTTTTGTTTTTTAGATT
3' ss Score
11.16
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
AACTCATATGCAGGACCTGAAGGATGTCACTAACAATGTACATTATGAGAACTACAGAAGCAGAAAACTGGCAGCTGTTACATACAACGGTGTTGACAACAATAAAAATAAAGGGCAGCTAACAAA
Seq A exon
ATTTGACACAGTTGAAGGCAT
Seq C2 exon
GAGCCCGCTGGCACAGATGGAGGAGGAGAGGAGAGAGCATGTAGCCAAAATGAAAAAAATGGAGATGGAAATGGAACAGGTGTTTGAGATGAAAGTTAAAGAAAAAGTACAGAAACTGAAGGACTCTGAAGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012138_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.442 A=1.000 C2=0.652
Domain overlap (PFAM):
C1:
PF0073513=Septin=PD(11.6=74.4)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGAAAACTGGCAGCTGTT
R:
ACATGCTCTCTCCTCTCCTCC
Band lengths:
110-131
Functional annotations
There are 0 annotated functions for this event