DreEX0065744 @ danRer10
Exon Skipping
Gene
ENSDARG00000026137 | sfxn5b
Description
sideroflexin 5b [Source:ZFIN;Acc:ZDB-GENE-050706-107]
Coordinates
chr14:46332035-46340540:+
Coord C1 exon
chr14:46332035-46332088
Coord A exon
chr14:46335259-46335324
Coord C2 exon
chr14:46340425-46340540
Length
66 bp
Sequences
Splice sites
3' ss Seq
TTCCACAATGTCATCTTTAGCCA
3' ss Score
4.37
5' ss Seq
GCCGTAAGT
5' ss Score
10.11
Exon sequences
Seq C1 exon
GTTGTTGGTCTTCTCCTTCCTAACCAGACTTTGGCCTCCACTGTTTTCTGGCAG
Seq A exon
CCAACGCCAACCTCAAAGTTTATTCAGGGATACGTGGGAGCCGTGACCAGCGCTGTTTCTATTGCC
Seq C2 exon
CCAGTGCAAACATCTGCAATGTGGCTCTAATGAGACACAATGAGCTGTCGGAGGGAATCGATGTTTTGGACAGCGATGGGAATGTGGTGGGATCCTCACGGATTGCTGCCAAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000026137_MULTIEX1-2/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0382012=Mtc=FE(5.5=100)
A:
PF0382012=Mtc=FE(6.8=100)
C2:
PF0382012=Mtc=FE(12.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGGTCTTCTCCTTCCTAACCA
R:
ATGTTTGGCAGCAATCCGTGA
Band lengths:
168-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]