HsaEX0057750 @ hg38
Exon Skipping
Gene
ENSG00000144040 | SFXN5
Description
sideroflexin 5 [Source:HGNC Symbol;Acc:HGNC:16073]
Coordinates
chr2:72971570-73000487:-
Coord C1 exon
chr2:73000431-73000487
Coord A exon
chr2:72998949-72999014
Coord C2 exon
chr2:72971570-72971685
Length
66 bp
Sequences
Splice sites
3' ss Seq
ATTCTGCCTCTGTTTTCCAGCCT
3' ss Score
7.58
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
TGGCTGAACCAGAGCCACAATGCCTGTGTCAACTATGCAAACCGCAATGCGACCAAG
Seq A exon
CCTTCACCTGCATCCAAGTTCATCCAGGGATACCTGGGAGCTGTCATCAGCGCCGTCTCCATTGCT
Seq C2 exon
CCAGTGCCAATATCTGCAATGTGGTCCTGATGCGGTACGGGGAGCTGGAGGAAGGGATTGATGTCCTGGACAGCGATGGCAACCTCGTGGGCTCCTCCAAGATCGCAGCCCGACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144040_MULTIEX1-3/12=2-5
Average complexity
C3
Mappability confidence:
92%=100=92%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.078 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0382012=Mtc=FE(10.4=100)
A:
PF0382012=Mtc=FE(11.5=100)
C2:
PF0382012=Mtc=FE(12.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACCAGAGCCACAATGCCTG
R:
GTGTCGGGCTGCGATCTTG
Band lengths:
168-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development