HsaEX0057750 @ hg19
Exon Skipping
Gene
ENSG00000144040 | SFXN5
Description
sideroflexin 5 [Source:HGNC Symbol;Acc:16073]
Coordinates
chr2:73198699-73227616:-
Coord C1 exon
chr2:73227560-73227616
Coord A exon
chr2:73226078-73226143
Coord C2 exon
chr2:73198699-73198814
Length
66 bp
Sequences
Splice sites
3' ss Seq
ATTCTGCCTCTGTTTTCCAGCCT
3' ss Score
7.58
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
TGGCTGAACCAGAGCCACAATGCCTGTGTCAACTATGCAAACCGCAATGCGACCAAG
Seq A exon
CCTTCACCTGCATCCAAGTTCATCCAGGGATACCTGGGAGCTGTCATCAGCGCCGTCTCCATTGCT
Seq C2 exon
CCAGTGCCAATATCTGCAATGTGGTCCTGATGCGGTACGGGGAGCTGGAGGAAGGGATTGATGTCCTGGACAGCGATGGCAACCTCGTGGGCTCCTCCAAGATCGCAGCCCGACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144040_MULTIEX1-3/9=2-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.136 A=0.031 C2=0.000
Domain overlap (PFAM):
C1:
PF0382012=Mtc=FE(10.4=100)
A:
PF0382012=Mtc=FE(12.1=100)
C2:
PF0382012=Mtc=FE(12.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACCAGAGCCACAATGCCTG
R:
GTGTCGGGCTGCGATCTTG
Band lengths:
168-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)