DreEX0065948 @ danRer10
Exon Skipping
Gene
ENSDARG00000088202 | sh3d19
Description
SH3 domain containing 19 [Source:ZFIN;Acc:ZDB-GENE-050522-481]
Coordinates
chr1:23711123-23714671:-
Coord C1 exon
chr1:23714431-23714671
Coord A exon
chr1:23712385-23712453
Coord C2 exon
chr1:23711123-23711198
Length
69 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTTGATTTGTACAGCTT
3' ss Score
8.04
5' ss Seq
CAGGTGACC
5' ss Score
6.54
Exon sequences
Seq C1 exon
GCCGAGTGGAGGAAAAGTATTGCCTCCTCGTCCACCACCAGCTAAAACAGGCCCAGGAAGACCACCTCCTCCACAGACGAATAACTCCCAACGGCGACCATCTGATTCAGGATTTTCACAAATAGCTCCATCAAAACAACAGCCATCTCAATGGCAGCAACAAAACCGTAGAGCTTCTAAAAAGGGGCCTGCTCTACCACCAAGACCCAACCCTGGACATCGTCTTTACAACAAATACACG
Seq A exon
CTTGAAGTCCCTCATGGAATTGCTGAGTTTGACTACAATGGCTCTAACACTGGAGAGCTGTCCTTTCAG
Seq C2 exon
AAAACCAGTTCCTTTAGAGGAATGGGAGGAAATGCTGGATCTCTACAAGTGGAAGCCCTGTATGACTTCACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088202_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.652 C2=0.308
Domain overlap (PFAM):
C1:
NO
A:
PF0765312=SH3_2=PU(33.3=78.3)
C2:
PF0001823=SH3_1=PU(17.4=30.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATGGCAGCAACAAAACCGT
R:
TGGAGTGAAGTCATACAGGGCT
Band lengths:
168-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]