HsaEX0057982 @ hg19
Exon Skipping
Gene
ENSG00000109686 | SH3D19
Description
SH3 domain containing 19 [Source:HGNC Symbol;Acc:30418]
Coordinates
chr4:152065062-152069338:-
Coord C1 exon
chr4:152069074-152069338
Coord A exon
chr4:152065372-152065440
Coord C2 exon
chr4:152065062-152065202
Length
69 bp
Sequences
Splice sites
3' ss Seq
TTTATTGGTTTACGTTTAAGCTG
3' ss Score
4.44
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
ACCTGTGAATGGAAAAACCATTCCAACTCAACAGCCTCCAACCAAGGTGCCCCCTGAGAGACCACCTCCCCCAAAGCTTTCTGCAACCAGAAGATCTAATAAGAAACTGCCTTTTAATCGATCCTCTTCTGACATGGATCTTCAGAAAAAACAAAGTAACTTGGCAACTGGACTCTCAAAAGCCAAGAGTCAAGTTTTTAAAAATCAAGATCCGGTGCTACCCCCTCGTCCCAAACCAGGACACCCTCTCTACAGTAAATACATG
Seq A exon
CTGTCTGTGCCTCATGGAATTGCCAATGAAGATATTGTCTCTCAAAACCCCGGAGAACTCTCTTGTAAG
Seq C2 exon
CGTGGGGATGTACTTGTGATGCTGAAGCAGACGGAAAATAATTACTTGGAGTGCCAAAAGGGAGAAGACACTGGCAGAGTTCACCTGTCTCAAATGAAGATTATCACTCCACTTGATGAACATCTTAGAAGCAGACCAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109686_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.981 A=0.609 C2=0.518
Domain overlap (PFAM):
C1:
NO
A:
PF0765312=SH3_2=PU(33.3=78.3)
C2:
PF0765312=SH3_2=PD(63.0=72.3)
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACTGGACTCTCAAAAGCC
R:
CTCTGCCAGTGTCTTCTCCCT
Band lengths:
181-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)