GgaEX0014979 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr4:34383888-34386478:-
Coord C1 exon
chr4:34386214-34386478
Coord A exon
chr4:34385246-34385314
Coord C2 exon
chr4:34383888-34383960
Length
69 bp
Sequences
Splice sites
3' ss Seq
CCCATTTGCTCCTATTCAAGCTG
3' ss Score
5.26
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GCTTGTGGATGGAAAAATTATACCAGCTCGACCTCCCCCACCTAAAGGTGTTCCTGGAAGGCCACCTCCACCAAAACTCTCTGCAACCAAGACCTCCTCCCAGAAGGATGCTCTTTCCCGATCCACTTCTGACATTGCTTCTGATAAAAAAACAAGCAAGCTCAGATTGGGACCCAAGAGAACAAAAAGCCAAGTCTTAAAAAATCAAGATCCAGCTTTACCTCCTAGACCTAAGCCAGGTCATCCCCTCTATAATAAATACATG
Seq A exon
CTGTCCGCGCCTCATGGAGTTGCCAAGGAAAACTGCCTTCCCAGAAACCATGGAGAACTGTCTCGTAAG
Seq C2 exon
GATTCAAACAGCTCTCCAAAAGTTTCTGACACAAGTGCTCCCCATGCTGTAGCACTGCATGATTTTTCTGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010081-'9-16,'9-13,10-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.655 C2=0.520
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0001823=SH3_1=PU(17.4=32.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAAGCAAGCTCAGATTGGGA
R:
CTACAGCATGGGGAGCACTTG
Band lengths:
167-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]