MmuEX0042174 @ mm10
Exon Skipping
Gene
ENSMUSG00000028082 | Sh3d19
Description
SH3 domain protein D19 [Source:MGI Symbol;Acc:MGI:1350923]
Coordinates
chr3:86104083-86107352:+
Coord C1 exon
chr3:86104083-86104347
Coord A exon
chr3:86106970-86107038
Coord C2 exon
chr3:86107212-86107352
Length
69 bp
Sequences
Splice sites
3' ss Seq
TCTTACGGTTTACATTTAAGCTG
3' ss Score
6.13
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
ACCTGTACATGGAAAAGTCATTCCAGTTTGGAGGCCTCCCCCAAAAGGGGCCCCTGAGAGACCACCACCCCCTAAACTTCCTGCATCCAAATCATCAAATAAAAATCTGCCTTTTAACCGCTCCTCCTCTGACATGGATCTTCAGAAGAAGCAAAGCCACTTTGTATCTGGACTCTCAAAAGCCAAGAGTCAAATCTTTAAAAACCAAGATCCGGTGCTACCCCCTCGTCCCAAACCGGGACACCCTCTCTACAGGAAATACATG
Seq A exon
CTGTCTGTGCCTCATGGAATTGCCAATGAAGACATTGTCTCCCGAAACCCCACGGAACTCTCTTGTAAG
Seq C2 exon
CGTGGGGATGTCCTTGTGATCCTGAAGCAGGCAGAAAATAATTACTTGGAATGCCAACGGGGAGAAGGCACCGGCAGAGTCCACCCATCCCAGATGAAGATTGTCACTCCCCTGGACGAGCGCCCGAGAGGCAGACCTAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028082_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.609 C2=0.626
Domain overlap (PFAM):
C1:
NO
A:
PF0765312=SH3_2=PU(33.3=78.3)
C2:
PF0765312=SH3_2=PD(63.0=72.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTTTAACCGCTCCTCCTC
R:
GATCACAAGGACATCCCCACG
Band lengths:
178-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types