DreEX0066005 @ danRer10
Exon Skipping
Gene
ENSDARG00000035470 | sh3glb2b
Description
SH3-domain GRB2-like endophilin B2b [Source:ZFIN;Acc:ZDB-GENE-040426-833]
Coordinates
chr5:31061709-31064981:-
Coord C1 exon
chr5:31064919-31064981
Coord A exon
chr5:31064507-31064551
Coord C2 exon
chr5:31061709-31061732
Length
45 bp
Sequences
Splice sites
3' ss Seq
ACTTTTCTCATTTCATGCAGTGG
3' ss Score
7.33
5' ss Seq
AAGGTTGTA
5' ss Score
-0.35
Exon sequences
Seq C1 exon
GCTGCGCCTGACTTTCAGGAGACTAGGCCACGAAATTATGTTCTGTCCGCCAGTGCATCTGCG
Seq A exon
TGGGATAGGGAAGTTGATGAATCATGTCTGGCTGACAGAGAAAAG
Seq C2 exon
CTCTGGAGTGAGGAAGTAGATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035470-'10-13,'10-12,11-13
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.095 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0311413=BAR=FE(8.6=100)
A:
PF0311413=BAR=FE(4.8=100)
C2:
PF0311413=BAR=FE(2.5=100)
Main Inclusion Isoform:
ENSDART00000147779fB5536
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]