DreEX0066014 @ danRer10
Exon Skipping
Gene
ENSDARG00000035470 | sh3glb2b
Description
SH3-domain GRB2-like endophilin B2b [Source:ZFIN;Acc:ZDB-GENE-040426-833]
Coordinates
chr5:31058988-31070250:-
Coord C1 exon
chr5:31070158-31070250
Coord A exon
chr5:31064919-31064981
Coord C2 exon
chr5:31058988-31059077
Length
63 bp
Sequences
Splice sites
3' ss Seq
TTTCCCCCCTCCACCTGTAGGCT
3' ss Score
12.32
5' ss Seq
GCGGTAAGA
5' ss Score
9.63
Exon sequences
Seq C1 exon
AGAGAGAGACGGCTTCTTGAGAACCGACGTCTTGACCTGGATGTTTGCAAAGCTCGGCTCAAGAAAGCAAAGTTAGCAGAGGCCAAGGCAGCT
Seq A exon
GCTGCGCCTGACTTTCAGGAGACTAGGCCACGAAATTATGTTCTGTCCGCCAGTGCATCTGCG
Seq C2 exon
GCAGAGCATGAGTTGCGTGTGGCTCAGACGGAGTTTGACAGACAGGCAGAAGTGACTCGCCTCCTGCTGGAGGGCATCAGCAGCACACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035470_MULTIEX1-6/7=5-C2
Average complexity
C2
Mappability confidence:
92%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.095 C2=0.143
Domain overlap (PFAM):
C1:
PF0311413=BAR=FE(12.2=100)
A:
PF0311413=BAR=FE(8.6=100)
C2:
PF0311413=BAR=FE(11.8=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACGGCTTCTTGAGAACCG
R:
GCCTGTCTGTCAAACTCCGTC
Band lengths:
135-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]