GgaEX0006092 @ galGal3
Exon Skipping
Gene
ENSGALG00000004512 | SHLB2_CHICK
Description
NA
Coordinates
chr17:5991912-6002447:-
Coord C1 exon
chr17:6002355-6002447
Coord A exon
chr17:5998602-5998664
Coord C2 exon
chr17:5991912-5992001
Length
63 bp
Sequences
Splice sites
3' ss Seq
AACTCTATTCCCCCTATTAGGCT
3' ss Score
6.34
5' ss Seq
GCGGTAAGA
5' ss Score
9.63
Exon sequences
Seq C1 exon
AAAGAGCGGAGGATCCTGCAGAACCGCCGCCTGGATCTGGATGCCTGCAAAGCAAGGTTGAAGAAAGCCAAAGCTGCAGAAGCAAAAGCAGCG
Seq A exon
GCTGTGCCTGACTTTCAGGAGACTAGACCTCGTAATTACGTTCTCTCCGCCAGCGCATCAGCG
Seq C2 exon
GCAGAGCACGAGCTGCGGCTCACTCAGACCGAGTTTGATCGGCAGGCAGAGGTGACACGTCTGCTGCTGGAGGGGATCAGCAGCACACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004512_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.022 A=0.095 C2=0.167
Domain overlap (PFAM):
C1:
PF0311413=BAR=FE(10.9=100)
A:
PF0311413=BAR=FE(7.3=100)
C2:
PF0311413=BAR=FE(10.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGAGCGGAGGATCCTGCAG
R:
CTCTGCCTGCCGATCAAACTC
Band lengths:
144-207
Functional annotations
There are 0 annotated functions for this event