GgaEX0006091 @ galGal3
Exon Skipping
Gene
ENSGALG00000004512 | SHLB2_CHICK
Description
NA
Coordinates
chr17:5998602-6002447:-
Coord C1 exon
chr17:6002355-6002447
Coord A exon
chr17:6000661-6000672
Coord C2 exon
chr17:5998602-5998664
Length
12 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTGTAATTTGCTCAGTGT
3' ss Score
5.73
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
AAAGAGCGGAGGATCCTGCAGAACCGCCGCCTGGATCTGGATGCCTGCAAAGCAAGGTTGAAGAAAGCCAAAGCTGCAGAAGCAAAAGCAGCG
Seq A exon
TGTGAGGGAGAT
Seq C2 exon
GCTGTGCCTGACTTTCAGGAGACTAGACCTCGTAATTACGTTCTCTCCGCCAGCGCATCAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004512-'5-6,'5-5,6-6
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.022 A=0.000 C2=0.095
Domain overlap (PFAM):
C1:
PF0311413=BAR=FE(10.9=100)
A:
PF0311413=BAR=FE(1.1=100)
C2:
PF0311413=BAR=FE(7.3=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGCCTGCAAAGCAAGGTTG
R:
GCTGGCGGAGAGAACGTAATT
Band lengths:
108-120
Functional annotations
There are 0 annotated functions for this event