DreEX0066003 @ danRer10
Exon Skipping
Gene
ENSDARG00000008983 | sh3glb2a
Description
SH3-domain GRB2-like endophilin B2a [Source:ZFIN;Acc:ZDB-GENE-061201-8]
Coordinates
chr8:2715233-2718781:+
Coord C1 exon
chr8:2715233-2715325
Coord A exon
chr8:2715585-2715596
Coord C2 exon
chr8:2718719-2718781
Length
12 bp
Sequences
Splice sites
3' ss Seq
TTCTGCTTTAACCTTCGCAGTGT
3' ss Score
7.53
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
Exon sequences
Seq C1 exon
AGAGAGCGGAGACTCCTGGAGAATCGACGCTTGGATCTGGATGCCTGTAAAGCACGTCTCAAGAAGGCCAAAGCTGCGGAAGCCAAAGCGGCT
Seq A exon
TGTGAGGGAGAA
Seq C2 exon
GCTGTTCCAGACTTTCAAGAGACTCGACCACGTAATTATGTGCTTTCTGCCAGCGCATCTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000008983-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=0.000 C2=0.095
Domain overlap (PFAM):
C1:
PF0311413=BAR=PU(24.2=96.8)
A:
PF0311413=BAR=FE(1.1=100)
C2:
PF0311413=BAR=FE(10.0=100)
Main Inclusion Isoform:
ENSDART00000051403fB5535
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGACGCTTGGATCTGGATG
R:
ACGTGGTCGAGTCTCTTGAAA
Band lengths:
104-116
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]