BtaEX0032343 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010626 | SH3GLB2
Description
Bos taurus SH3-domain GRB2-like endophilin B2 (SH3GLB2), mRNA. [Source:RefSeq mRNA;Acc:NM_001076802]
Coordinates
chr11:99511478-99513771:-
Coord C1 exon
chr11:99513679-99513771
Coord A exon
chr11:99512306-99512317
Coord C2 exon
chr11:99511478-99511540
Length
12 bp
Sequences
Splice sites
3' ss Seq
CTTTGGGTAACTTGGCTCAGTGT
3' ss Score
1.14
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
AAGGAGAGGCGGCTCCTGCAGAACCGGCGTCTAGACCTGGATGCCTCCAAAGCGCGGCTCAAGAAGGCCAAGGCTGCCGAAGCCAAAGCCACG
Seq A exon
TGTGAGGGAGAT
Seq C2 exon
ACGGTGCCTGACTTTCAGGAGACTAGACCTCGTAATTACATTCTCTCGGCCAGCGCCTCCGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010626-MICROEX1
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=0.750 C2=0.143
Domain overlap (PFAM):
C1:
PF0311413=BAR=FE(10.9=100)
A:
PF0311413=BAR=FE(1.1=100)
C2:
PF0311413=BAR=FE(7.2=100)
Main Inclusion Isoform:
ENSBTAT00000014049fB6341
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAAGAAGGCCAAGGCTG
R:
CGCTGGCCGAGAGAATGTAAT
Band lengths:
92-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development