RnoEX0080507 @ rn6
Exon Skipping
Gene
ENSRNOG00000017295 | Sh3glb2
Description
SH3 domain-containing GRB2-like endophilin B2 [Source:RGD Symbol;Acc:1305886]
Coordinates
chr3:8912901-8914777:-
Coord C1 exon
chr3:8914685-8914777
Coord A exon
chr3:8913588-8913599
Coord C2 exon
chr3:8912901-8912963
Length
12 bp
Sequences
Splice sites
3' ss Seq
CTTTGGGTAACTTGGCTCAGTGT
3' ss Score
1.14
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
AAGGAGAGGCGGCTTCTGCAGAACCGGCGCCTTGACTTGGATGCCTGCAAAGCCCGGCTAAAGAAGGCCAAGGCGGCAGAAGCCAAAGCCACG
Seq A exon
TGTGAGGGAGAT
Seq C2 exon
ACGGTGCCTGACTTTCAGGAGACTAGACCTCGTAATTACATTCTCTCGGCCAGCGCCTCCGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017295-'9-16,'9-14,10-16
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=0.750 C2=0.143
Domain overlap (PFAM):
C1:
PF0311413=BAR=FE(16.3=100)
A:
PF0311413=BAR=FE(1.6=100)
C2:
PF0311413=BAR=FE(10.9=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAAAGCCCGGCTAAAGAAG
R:
CGCTGGCCGAGAGAATGTAAT
Band lengths:
103-115
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]