DreEX0066008 @ danRer10
Exon Skipping
Gene
ENSDARG00000035470 | sh3glb2b
Description
SH3-domain GRB2-like endophilin B2b [Source:ZFIN;Acc:ZDB-GENE-040426-833]
Coordinates
chr5:31058988-31070250:-
Coord C1 exon
chr5:31070158-31070250
Coord A exon
chr5:31066548-31066559
Coord C2 exon
chr5:31058988-31059077
Length
12 bp
Sequences
Splice sites
3' ss Seq
CTCTGTTATTATTCTCACAGTGT
3' ss Score
7.14
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
AGAGAGAGACGGCTTCTTGAGAACCGACGTCTTGACCTGGATGTTTGCAAAGCTCGGCTCAAGAAAGCAAAGTTAGCAGAGGCCAAGGCAGCT
Seq A exon
TGTGAGGGAGAT
Seq C2 exon
GCAGAGCATGAGTTGCGTGTGGCTCAGACGGAGTTTGACAGACAGGCAGAAGTGACTCGCCTCCTGCTGGAGGGCATCAGCAGCACACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035470-MICROEX2
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.000 C2=0.143
Domain overlap (PFAM):
C1:
PF0311413=BAR=FE(12.2=100)
A:
PF0311413=BAR=FE(1.2=100)
C2:
PF0311413=BAR=FE(11.8=100)
Main Inclusion Isoform:
ENSDART00000098172fB5537
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTGCAAAGCTCGGCTCAAG
R:
CTGTCAAACTCCGTCTGAGCC
Band lengths:
92-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]