RnoEX0080508 @ rn6
Exon Skipping
Gene
ENSRNOG00000017295 | Sh3glb2
Description
SH3 domain-containing GRB2-like endophilin B2 [Source:RGD Symbol;Acc:1305886]
Coordinates
chr3:8911451-8914777:-
Coord C1 exon
chr3:8914685-8914777
Coord A exon
chr3:8912901-8912963
Coord C2 exon
chr3:8911451-8911474
Length
63 bp
Sequences
Splice sites
3' ss Seq
TGAACTCTGTTCCCCGCCAGACG
3' ss Score
7.2
5' ss Seq
GCGGTAAGC
5' ss Score
8.99
Exon sequences
Seq C1 exon
AAGGAGAGGCGGCTTCTGCAGAACCGGCGCCTTGACTTGGATGCCTGCAAAGCCCGGCTAAAGAAGGCCAAGGCGGCAGAAGCCAAAGCCACG
Seq A exon
ACGGTGCCTGACTTTCAGGAGACTAGACCTCGTAATTACATTCTCTCGGCCAGCGCCTCCGCG
Seq C2 exon
CTTTGGAACGATGAGGTAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017295_MULTIEX1-2/4=C1-4
Average complexity
C2*
Mappability confidence:
89%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=0.143 C2=0.208
Domain overlap (PFAM):
C1:
PF0311413=BAR=FE(16.3=100)
A:
PF0311413=BAR=FE(10.9=100)
C2:
PF0311413=BAR=FE(3.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGAGAGGCGGCTTCTGC
R:
CTTGTCTACCTCATCGTTCCA
Band lengths:
117-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]