MmuEX6100259 @ mm10
Exon Skipping
Gene
ENSMUSG00000026860 | Sh3glb2
Description
SH3-domain GRB2-like endophilin B2 [Source:MGI Symbol;Acc:MGI:2385131]
Coordinates
chr2:30347081-30350380:-
Coord C1 exon
chr2:30350288-30350380
Coord A exon
chr2:30348555-30348617
Coord C2 exon
chr2:30347081-30347104
Length
63 bp
Sequences
Splice sites
3' ss Seq
TGAACTCTGTTCCCTGCCAGACG
3' ss Score
7.41
5' ss Seq
GCGGTAAGC
5' ss Score
8.99
Exon sequences
Seq C1 exon
AAGGAGAGGCGGCTCCTGCAGAACCGGCGTCTTGACCTGGATGCCTGCAAAGCCCGGCTAAAGAAGGCCAAGGCAGCCGAAGCCAAAGCCACG
Seq A exon
ACGGTGCCTGACTTTCAGGAGACTAGACCTCGTAATTACATTCTATCGGCCAGCGCCTCCGCG
Seq C2 exon
CTTTGGAACGATGAAGTCGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026860-'20-24,'20-18,26-24
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=0.143 C2=0.000
Domain overlap (PFAM):
C1:
PF0311413=BAR=FE(11.8=100),PF0313112=bZIP_Maf=FE(34.1=100)
A:
PF0311413=BAR=PD(4.1=38.1)
C2:
PF0311413=BAR=FE(2.7=100),PF0313112=bZIP_Maf=FE(8.0=100)
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types