MmuINT0143126 @ mm10
Intron Retention
Gene
ENSMUSG00000026860 | Sh3glb2
Description
SH3-domain GRB2-like endophilin B2 [Source:MGI Symbol;Acc:MGI:2385131]
Coordinates
chr2:30347081-30348617:-
Coord C1 exon
chr2:30348555-30348617
Coord A exon
chr2:30347105-30348554
Coord C2 exon
chr2:30347081-30347104
Length
1450 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGC
5' ss Score
8.99
3' ss Seq
TGCTCTTCTGGTCTCCATAGCTT
3' ss Score
9.27
Exon sequences
Seq C1 exon
ACGGTGCCTGACTTTCAGGAGACTAGACCTCGTAATTACATTCTATCGGCCAGCGCCTCCGCG
Seq A exon
GTAAGCAACCCTCCTGCCATTCCTTGCCCCACCCTGGCCTCCTTGGCCCACAGCTCTTGTCACTGGCTCTGCCAGCGCAGAACCAGAAGACAGCAGGTGAGGCAAAGGGTCCTGCTCATGTTGCAGGTTGCCCTGAGGGGCTGAGGTGCAGCTCAGAACAGGGAAGTGACAACTCCATGTGGCCCTGTCTGGTCCAGCAGGCAGGCTGGACTGGCTTCTCCCTAGGCAAGGTAGAAGATATTTTGACTAGCTGTCCAGAAAAACCCCTTCGTGTCCTTAGGACAGCACAGTACCACCTCTAGGGAACCTGAGGAAATTTCCATTCTGCACTTTCTCCCACAAAGTCACAGCACTCCAGCCTCCTTATGGGTCTGGGGGGACCCTGAGGAAAGAGGGGGGCCGCCTAGGTCTGGCTTCCTGTCTCAGACTCTTGCCTTAGCACCATGGTAGGTTGCAAACTAGATGGCCTCGGAAGCTCCTGGAAAGCAGGTGGGAGGTCAGCCTGAGGAGCAGGTCAGAGGTAAGATGGAGGAAGGCAGGCTAGGCTGGCAGAGTAGACTGGTTGAGTTAGTAGGTGTCTATTGACTGTGGGGGGTTGGCCAGCCACACCTCTCACCCTATGCCCTGGGTGAAACTCCCGCACAGGCCATCTGACCCCTCTGCTCCTCTTCTGAGCATGCCACTGTGTGATTTGTGCTGTCATTCCATGGCTGGCCATTGTCTTTGAGATGTCAATGCTCTGGCCTGTTAACTAGCCCTCCAACAGGGCACACGACAATGGTGCTCACTGTGGGCTGTGCATTCTGCTGGCCCAGTTCAACTGTCCATGTGTCAGGGTGTTGTCCTAGGCCAGATTTCCACAAATGACCATAAACTGGGTCTCCTAAGTCATGGTGGGGGGAGGGGGGCTTTTCTTCCCTAGACTCTGGATGACACTTCCCGCTCCCCTCCCTGGGCCGAGTGGAAGGAGAAACATCCCGGAGGGTGGAGGCTGCCCTGTTTTTTTCTTTTGCCACTGACCCCAAGTGTGACTCTGGCCCGAGGCTGCCTTCCTCTGCCGGAGGACAGAAAGGTTCAGTGACTGGCCCAGGGTCACTTGTCCTGTCCTGCCTCCAAGCAGGAGTCAGGGTGGGGTGGGGACATTCGGTCTCTAAGACCCACTCAGAGTTGGGGGAGGCATAGGAAAAGTACAAGCAAGACTTGCAGCTGGCTGGCCCTGCATGCAGCATGCTAGAGGGATGCGTGCCACCTCCCTGCCCTTACACCAAACCTTGTTCCAGCCTCAGCTCCTGGTTGGGCTGGGGTGGGTTGTGCAAGATAGGGTGGGCAGAGGTTGGGTCCCTGGGAGCTGGAGCAGGCACAGGCTTTGGCCTCTGGCTGTCCCTGCTCTTCCACTCACCAGTGCCCACCTTGCCTTCCTTGCTGCCTGGTGCTCTTCTGGTCTCCATAG
Seq C2 exon
CTTTGGAACGATGAAGTCGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026860:ENSMUST00000028214:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0311413=BAR=PD(4.1=38.1)
A:
NA
C2:
PF0311413=BAR=FE(2.7=100),PF0313112=bZIP_Maf=FE(8.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types