DreINT0134423 @ danRer10
Intron Retention
Gene
ENSDARG00000008983 | sh3glb2a
Description
SH3-domain GRB2-like endophilin B2a [Source:ZFIN;Acc:ZDB-GENE-061201-8]
Coordinates
chr8:2718719-2720017:+
Coord C1 exon
chr8:2718719-2718781
Coord A exon
chr8:2718782-2719993
Coord C2 exon
chr8:2719994-2720017
Length
1212 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGA
5' ss Score
4.95
3' ss Seq
GTTGTCTCTTCGCTGATCAGCTC
3' ss Score
5.26
Exon sequences
Seq C1 exon
GCTGTTCCAGACTTTCAAGAGACTCGACCACGTAATTATGTGCTTTCTGCCAGCGCATCTGCA
Seq A exon
GTAAGAAAATCCCATCCACACACACGCACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACATACACAAACATAAGAATTTGTAATTATTATTTTTAAACTGGAATGATTTACAGTACAACAAATGTATATTTTACAGTAAAATGAATCCTTTATATCAGAGATGGGCAAACTAGGTTTGCATATGGAAACCTTTGATTTGGTCTTACAACCTACCGGAGAAAAGAGGGAGAATGATGGGACTGATTTAGAGACCAAATTTAATGTAACTAAATAATCTTTTTTTCCTTTTGACATAAGATTATTTTGTGTGCCCCATTGGCAGATTATTTTGCTTGTTTTAAGGAAAAACTAACTTAATATTGGAATATTATTTCTTAAAACAAGACTATATGTTTTGCTTGTCTAGAAAATTCTTCTTGATTTAAGAATTTTAAAATATTTGGACTAGAAACAAGACCAAAAAATCTAAGTAAGAACATCATTTTTTCAGTGCATAATTTGTTTTATTATTTTATTTTAAACTGTTGTTGAAAAAGTAAAAGAAAAATTGTCTCGGAGACACAAAATCTACCGGCAGTTCATAAATCTATAGTCCTATCTATTCTCATGAATCTAAACACATGCATAATATTAGTAATAAAGTAATAATATTAATATTCATGAGTTTGTCAGACATGACCCTGTCAGGTTGGTTTTAAAGGACCAGTCTGCTTTTCTACTTTGGTTTAGTTCATTTTTTTTTGTACAAGGACAATACACAACAACACATTTGAAGCTATTTCAATCATAGGCAAGATGCATGGTATCAAAATTATAGCAAAAATGCTTATTTCCACTTGTAGTACCCGGGCAAGTATATTAAGTTATTATTATTGTGTGTAAATTAATTAAAATAGATCAGGTCAATAATATTACACACCTGTATACACAAACACAAACACACACACACACACACACACGTCACATCAGTAGTCTACATTAAGAAATGTGAGTTATTTTACTGATTTCTATTCTAGATAGGCTTTCTAGATATTTTACTCTTGTTCGTTGAGGAAGAGCATCCTAATACTCACTGCTGTTATCAAAATAATGATGTCCTTCTGCTCTCTCATTGATTGTCTTTATTGCAACTTTTCTTTTGACATTTCTGAATTTTGTGTTTTTGTTGTCTCTTCGCTGATCAG
Seq C2 exon
CTCTGGAGCGAGGAGCTTGATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000008983:ENSDART00000155092:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.095 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0311413=BAR=FE(10.0=100)
A:
NA
C2:
PF0311413=BAR=FE(2.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]