HsaINT0149371 @ hg38
Intron Retention
Gene
ENSG00000148341 | SH3GLB2
Description
SH3 domain containing GRB2 like endophilin B2 [Source:HGNC Symbol;Acc:HGNC:10834]
Coordinates
chr9:129010670-129012298:-
Coord C1 exon
chr9:129012236-129012298
Coord A exon
chr9:129010694-129012235
Coord C2 exon
chr9:129010670-129010693
Length
1542 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGC
5' ss Score
8.99
3' ss Seq
TCCTGCTGCCGTCTCCACAGCTC
3' ss Score
9.13
Exon sequences
Seq C1 exon
ACGGTGCCTGACTTTCAGGAGACTAGACCTCGTAATTACATTCTCTCGGCCAGCGCCTCCGCG
Seq A exon
GTAAGCGCACCCCACCCCCACCCCACCCCTCGTCCTCCTCTCTCCCCACGTCCCACACCACTGCCTCTGACTGCACAGGAGCTAGAAGCCAGCTTGGGTAAGGCGGGGGCACTGCCATGTGATCAGGTCAGTCCTGAGACACTGGGGAGGGGCAGCAGCCCCCACCTCTGTCCACGGCCTGGCCCCGGTGCCCTGTGGCCATGGAGCTGGACTTGTTTCCCTCTGCAAAACGCTGGAGCTGGCGGCAGGGCCAGCCACACTGAGTAGTGTGGAGAACTCAGGGCGGCAGCTGTCCCATCCCCAGGGCCCCTCCACCTCCTGCTGTCTCTGAATGCCAGGCCCTGGGGAGGCCCTGAGGATAGAGGAGGAGGCCTGGCCGTGCCTTTCTGGAGTTCACAGACCCCTAAAGACAGGAGGCAGGGATGGCGTCGTAGGCCTGGAGAGCGCCTGGGGGGCGGGAGGGCCTGAGGCTGTGCTTAAGGCCCAGAGGTCCTGGAGCAGGGCATGTCTTGTCCTGAGGCTTAGGCAGGGCCCCCAGGGGAGTTGGGGCAGGAGGTGGGGAGGACAGGATCGTGGAGGCTTCGCATGTCATGGTGTCTGTTGGTTTTTAGGCTTTCTTGGGAAGTCTGGTGTTTCCTATGTAGTTTGGGGACTAGGCCACACCTCTCCCTCATGCTTGTCACCACTGCTACACCTTGTCTGCCCACTTTCTCTCCTTCCCGCCCCTGGAGGTGAGACCCTCACCTCTCTCGTGAGCATGCTGCCTCATGTCTTCCGTGCCGTCGTTCTGTGGCTGGGTGACTGTCCCTCAGGCCGCCAACCCTAGTTGGCTCTCACAGCAACTTCCAGTGCTCCTGGACGGGGACTTCCTAAGCAGCATGGGGGCCACACGGGCCGGCCACGCACACTGGCCTGGGTCCGCATTCCCTATTTCAGGCTGTTGTCTCGGGTCAGATCTCCGGAAGCGGCAGGAGCGCTGGGTCTCCTGGTCGTGGCCGGGCAGCGTCTTTCTTCTTCAGGGTCTGGATGCCACTTCCCGCCTCCTCCCTGTGCCCAGTGGAAGGAGAAACATCCTAGAGGGTGGAGACTGCCCTGTTTTTCTTTTGCCATTGAGTCCCAGTGTGACTCAAGCACGAGGCCACCTTTCTCTGCCAGAGGACAGAAAGCTTCAGTGACTGGCCCAGGGTCACACAGTTCTGCCGCCCAGCCCAGCAGCCTGAGCCAGCAGTCAGGATGGGGTGGGGACACTCCGTCTCTCTTGAGACCCCACTCAGAGAATGGGGCTGACACTGTAGGAGAAATATAAGCAGGACTCCTGCTGGCTGCTCCCCTCCTGCATGAGGCATGTTAGAGGGACTGGGACCGCCAGCCCCCAGCTCCCATGCCGGGCCTCGGCCCAGTCTCAGCTCCTGTTTGGGAGGGGGGGCAGAGGGGCAGGGGGGCAGAAGTTGAGTCTGGGAGCTGGGGCAGGGCACAGGCTCTAGGGTCCAGCTGTCCTCCTCTCCCCTCCCCTGCTGGCCACTCCTGCTGCCGTCTCCACAG
Seq C2 exon
CTCTGGAATGATGAAGTGGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148341:ENST00000372564:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0311413=BAR=FE(7.1=100)
A:
NA
C2:
PF0311413=BAR=FE(2.7=100),PF0313112=bZIP_Maf=FE(7.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains