RnoINT0134725 @ rn6
Intron Retention
Gene
ENSRNOG00000017295 | Sh3glb2
Description
SH3 domain-containing GRB2-like endophilin B2 [Source:RGD Symbol;Acc:1305886]
Coordinates
chr3:8911451-8912963:-
Coord C1 exon
chr3:8912901-8912963
Coord A exon
chr3:8911475-8912900
Coord C2 exon
chr3:8911451-8911474
Length
1426 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGC
5' ss Score
8.99
3' ss Seq
TGCTGTTCTGGTCCCCACAGCTT
3' ss Score
9.42
Exon sequences
Seq C1 exon
ACGGTGCCTGACTTTCAGGAGACTAGACCTCGTAATTACATTCTCTCGGCCAGCGCCTCCGCG
Seq A exon
GTAAGCAACCCTTCCATCATGCCTTGCCCCACCCTGGCCTCCTTGGCCCACAGCTCCTGCCATTGGCTCTGCCAGCTCAGGCCTGGAAGACAGCAGGTGAGGCAAAGGGCCTGCTCATGTTGCAGGTTATCCCGAGAGGCTGAGGGGCAGCTCAGGGAAACAACTCCATGTGGCCCAGTTTGATCCAGCAGGCAGGCTGAGCTGGCTTCTCCCTAGGCAAGGTAGAAGATTCTTTGGCCAGCTGTAGAGAACCCCTTCATGTCCTTAGGACAGCACACAGTACCACCTCTAGGGAAGCTGAGGGACTTTCCATCCCATGCTTTCTCCCACAAAGGTATACCACTCAAGCCTCCTGGTGGGTCTGAGGGACCCTTGGGGTAAGAGGAGGCCGCCTGCATCTGGCGTCCTGTCTCGGATTCCTAGACAACTGGTTGGTTGCCTTAGCACCGTGGTAGGTTGCAAGCTAGATGGCCTGGGAAGCTACTGGAAAGCAGGTTGGAGGCAGGACGGAGGTAGGCAGGCTAGGCTGGCACAGTAGCCTGGTGTGAGTCGGTGTATACGGACTGTTGGGGCTAGGCCAGCCCCACATCTCTCTCCCTGTGCCCTGGGTGAAACTCCTGCACAGGCCATCCGCCCTCTGCTCCTGTTCTGAGCATGCTACTGTATGATTTGTGCTGTCATTCCATGGCTGGCAACTGTCTTTGAGATGTCAATGCTCAGGCCCGCTATATAGCCCTCCAACGTGGCACCTAACAGTGGTGTCCCCCACTGTGGGCTGTGCATTCTGCTGGCCCAGGTCAGCAGTTCATGTGTCAGAGTGTTGCCCTAGGCCAGATTTCCACACGTGACCATAAATTGGGTCTCCTAAGTCATGGTGGGGGGAGGGGGGCTTCTCTTCCCTAGACTCTGGATGACACTTCCCGCTCCCCTCCCTGGGCCGAGTGGAAGGAGAAACATCCCGGAGGGTGGAGGCTGCCCTGTTTTTTTCTTTTGCCACTGACCCCCAGTGTGACTCTGGCCCGAGGCTGCCTTTCCCTGCCGGAGGACAGAAAGGTTCAGTGACTGGCCCAGGGTCACTTGTCCTGTCCTGCCTCCGAGCAGGAGTCAGGGTGGGGTGGGGACATTTGGTCTCTAAGACCCACTTAGAGTTGGGGGTGGCTGTAGGAAAATAGAAGCAAGACTTCCAGTCGGCTGGCCCTGCATGCAGCATGCTGAGTGGGATGTGTACCCCCTGCCTACCCCTACACCAAACGTTGTTCCAGCCTCAGCTCCTGCGGCTGGGCTGGGTTGTGCAGGAAGGTGGGCGGAGGTTGGGTCCCTGGGAGCTGGGGCAGGCACGGGCTCTGGCGTTCGGCTGTCACTGCTCCTCCACTGACCAGTGCCCACTTTGCCTTCCCTGCTGCCCGTGCTGTTCTGGTCCCCACAG
Seq C2 exon
CTTTGGAACGATGAGGTAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017295:ENSRNOT00000023527:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=NA C2=0.208
Domain overlap (PFAM):
C1:
PF0311413=BAR=FE(10.9=100)
A:
NA
C2:
PF0311413=BAR=FE(3.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]