RnoEX0080509 @ rn6
Exon Skipping
Gene
ENSRNOG00000017295 | Sh3glb2
Description
SH3 domain-containing GRB2-like endophilin B2 [Source:RGD Symbol;Acc:1305886]
Coordinates
chr3:8911451-8912963:-
Coord C1 exon
chr3:8912901-8912963
Coord A exon
chr3:8911848-8911997
Coord C2 exon
chr3:8911451-8911474
Length
150 bp
Sequences
Splice sites
3' ss Seq
GGGGGGCTTCTCTTCCCTAGACT
3' ss Score
7.29
5' ss Seq
AAGGTTCAG
5' ss Score
2.52
Exon sequences
Seq C1 exon
ACGGTGCCTGACTTTCAGGAGACTAGACCTCGTAATTACATTCTCTCGGCCAGCGCCTCCGCG
Seq A exon
ACTCTGGATGACACTTCCCGCTCCCCTCCCTGGGCCGAGTGGAAGGAGAAACATCCCGGAGGGTGGAGGCTGCCCTGTTTTTTTCTTTTGCCACTGACCCCCAGTGTGACTCTGGCCCGAGGCTGCCTTTCCCTGCCGGAGGACAGAAAG
Seq C2 exon
CTTTGGAACGATGAGGTAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017295_MULTIEX1-3/4=2-4
Average complexity
C2
Mappability confidence:
90%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.080 C2=0.208
Domain overlap (PFAM):
C1:
PF0311413=BAR=FE(10.9=100)
A:
PF0311413=BAR=FE(21.3=100)
C2:
PF0311413=BAR=FE(3.8=100)
Main Inclusion Isoform:
ENSRNOT00000023527fB13346
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGTGCCTGACTTTCAG
R:
CTTGTCTACCTCATCGTTCCA
Band lengths:
87-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]