BtaEX0032347 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010626 | SH3GLB2
Description
Bos taurus SH3-domain GRB2-like endophilin B2 (SH3GLB2), mRNA. [Source:RefSeq mRNA;Acc:NM_001076802]
Coordinates
chr11:99509735-99511540:-
Coord C1 exon
chr11:99511478-99511540
Coord A exon
chr11:99510201-99510350
Coord C2 exon
chr11:99509735-99509758
Length
150 bp
Sequences
Splice sites
3' ss Seq
GGGGGGTCTTTCTTCTTTAGACT
3' ss Score
7.2
5' ss Seq
AAGGTTCAG
5' ss Score
2.52
Exon sequences
Seq C1 exon
ACGGTGCCTGACTTTCAGGAGACTAGACCTCGTAATTACATTCTCTCGGCCAGCGCCTCCGCG
Seq A exon
ACTCTGGAGGACACTTGCCGCCCCCCTTCCTGGGCCGAGTGGAAGGAGGACTATCCAGGAGGGTGGAGACGGCCCTGTTTTTTTCTTGTGCCTTTGAACCCCAGTCTGACTCTGGCACGAGGCTGCCTTTCTCTGCCGAAGGACAGAAAG
Seq C2 exon
CTCTGGAATGATGAGGTGGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010626_MULTIEX1-2/3=1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0311413=BAR=FE(7.2=100)
A:
PF0311413=BAR=FE(15.0=100)
C2:
PF0311413=BAR=FE(2.5=100)
Main Inclusion Isoform:
ENSBTAT00000014049fB6343
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGTGCCTGACTTTCAG
R:
TGTCCACCTCATCATTCCAGAG
Band lengths:
85-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development