MmuEX0042197 @ mm9
Exon Skipping
Gene
ENSMUSG00000026860 | Sh3glb2
Description
SH3-domain GRB2-like endophilin B2 [Source:MGI Symbol;Acc:MGI:2385131]
Coordinates
chr2:30202601-30204137:-
Coord C1 exon
chr2:30204075-30204137
Coord A exon
chr2:30203003-30203152
Coord C2 exon
chr2:30202601-30202624
Length
150 bp
Sequences
Splice sites
3' ss Seq
GGGGGGCTTTTCTTCCCTAGACT
3' ss Score
7.87
5' ss Seq
AAGGTTCAG
5' ss Score
2.52
Exon sequences
Seq C1 exon
ACGGTGCCTGACTTTCAGGAGACTAGACCTCGTAATTACATTCTATCGGCCAGCGCCTCCGCG
Seq A exon
ACTCTGGATGACACTTCCCGCTCCCCTCCCTGGGCCGAGTGGAAGGAGAAACATCCCGGAGGGTGGAGGCTGCCCTGTTTTTTTCTTTTGCCACTGACCCCAAGTGTGACTCTGGCCCGAGGCTGCCTTCCTCTGCCGGAGGACAGAAAG
Seq C2 exon
CTTTGGAACGATGAAGTCGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026860-'10-14,'10-12,14-14
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.080 C2=0.062
Domain overlap (PFAM):
C1:
PF0311413=BAR=PD(4.1=38.1)
A:
PF0311413=BAR=FE(14.8=100)
C2:
PF0311413=BAR=FE(2.7=100),PF0313112=bZIP_Maf=FE(8.0=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: