MmuEX0042197 @ mm10
Exon Skipping
Gene
ENSMUSG00000026860 | Sh3glb2
Description
SH3-domain GRB2-like endophilin B2 [Source:MGI Symbol;Acc:MGI:2385131]
Coordinates
chr2:30347081-30348617:-
Coord C1 exon
chr2:30348555-30348617
Coord A exon
chr2:30347483-30348428
Coord C2 exon
chr2:30347081-30347104
Length
946 bp
Sequences
Splice sites
3' ss Seq
GGGTCCTGCTCATGTTGCAGGTT
3' ss Score
7.47
5' ss Seq
AAGGTTCAG
5' ss Score
2.52
Exon sequences
Seq C1 exon
ACGGTGCCTGACTTTCAGGAGACTAGACCTCGTAATTACATTCTATCGGCCAGCGCCTCCGCG
Seq A exon
GTTGCCCTGAGGGGCTGAGGTGCAGCTCAGAACAGGGAAGTGACAACTCCATGTGGCCCTGTCTGGTCCAGCAGGCAGGCTGGACTGGCTTCTCCCTAGGCAAGGTAGAAGATATTTTGACTAGCTGTCCAGAAAAACCCCTTCGTGTCCTTAGGACAGCACAGTACCACCTCTAGGGAACCTGAGGAAATTTCCATTCTGCACTTTCTCCCACAAAGTCACAGCACTCCAGCCTCCTTATGGGTCTGGGGGGACCCTGAGGAAAGAGGGGGGCCGCCTAGGTCTGGCTTCCTGTCTCAGACTCTTGCCTTAGCACCATGGTAGGTTGCAAACTAGATGGCCTCGGAAGCTCCTGGAAAGCAGGTGGGAGGTCAGCCTGAGGAGCAGGTCAGAGGTAAGATGGAGGAAGGCAGGCTAGGCTGGCAGAGTAGACTGGTTGAGTTAGTAGGTGTCTATTGACTGTGGGGGGTTGGCCAGCCACACCTCTCACCCTATGCCCTGGGTGAAACTCCCGCACAGGCCATCTGACCCCTCTGCTCCTCTTCTGAGCATGCCACTGTGTGATTTGTGCTGTCATTCCATGGCTGGCCATTGTCTTTGAGATGTCAATGCTCTGGCCTGTTAACTAGCCCTCCAACAGGGCACACGACAATGGTGCTCACTGTGGGCTGTGCATTCTGCTGGCCCAGTTCAACTGTCCATGTGTCAGGGTGTTGTCCTAGGCCAGATTTCCACAAATGACCATAAACTGGGTCTCCTAAGTCATGGTGGGGGGAGGGGGGCTTTTCTTCCCTAGACTCTGGATGACACTTCCCGCTCCCCTCCCTGGGCCGAGTGGAAGGAGAAACATCCCGGAGGGTGGAGGCTGCCCTGTTTTTTTCTTTTGCCACTGACCCCAAGTGTGACTCTGGCCCGAGGCTGCCTTCCTCTGCCGGAGGACAGAAAG
Seq C2 exon
CTTTGGAACGATGAAGTCGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026860_MULTIEX2-3/3=2-C2
Average complexity
C1
Mappability confidence:
75%=75=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0311413=BAR=PD(4.1=38.1)
A:
NO
C2:
PF0311413=BAR=FE(2.7=100),PF0313112=bZIP_Maf=FE(8.0=100)
Main Inclusion Isoform:
ENSMUST00000113621fB3679
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types